Publications
Full list of publications can be found on my Google Scholar profile
- Paulo CT Souza, Riccardo Alessandri, Jonathan Barnoud, Sebastian Thallmair, Ignacio Faustino, Fabian Grünewald, Ilias Patmanidis, Haleh Abdizadeh, Bart MH Bruininks, Tsjerk A Wassenaar, Peter C Kroon, Josef Melcr, Vincent Nieto, Valentina Corradi, Hanif M Khan, Jan Domański, Matti Javanainen, Hector Martinez-Seara, Nathalie Reuter, Robert B Best, Ilpo Vattulainen, Luca Monticelli, Xavier Periole, D Peter Tieleman, Alex H de Vries, Siewert J Marrink Martini 3: a general purpose force field for coarse-grained molecular dynamics Nature Methods https://www.nature.com/articles/s41592-021-01098-3
- E Yamamoto, J Domański, FB Naughton, RB Best, AC Kalli, PJ Stansfeld, MSP Sansom, Multiple Lipid Binding Sites Determine the Affinity of PH Domains for Phosphoinositide-Containing Membranes Science advances https://advances.sciencemag.org/content/advances/6/8/eaay5736.full.pdf
- Richard J Gowers, Max Linke, Jonathan Barnoud, Tyler John Edward Reddy, Manuel N Melo, Sean L Seyler, Jan Domanski, David L Dotson, Sébastien Buchoux, Ian M Kenney, Oliver Beckstein, MDAnalysis: a Python package for the rapid analysis of molecular dynamics simulations https://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-19-29136
- J. Domański, M.S.P. Sansom, P.J. Stansfeld, R.B. Best, Balancing Force Field Protein–Lipid Interactions To Capture Transmembrane Helix–Helix Association https://pubs.acs.org/doi/abs/10.1021/acs.jctc.7b00983
- J. Domański, G. Hedger, R. Best, P.J. Stansfeld, M.S.P. Sansom, Convergence and Sampling in Determining Free Energy Landscapes for Membrane Protein Association DOI: 10.1021/acs.jpcb.6b08445